/*!

\if MANPAGES
\page dsr2html Render DICOM SR file and data set to HTML/XHTML
\else
\page dsr2html dsr2html: Render DICOM SR file and data set to HTML/XHTML
\endif

\section dsr2html_synopsis SYNOPSIS

\verbatim
dsr2html [options] dsrfile-in [htmlfile-out]
\endverbatim

\section dsr2html_description DESCRIPTION

The \b dsr2html utility renders the contents of a DICOM Structured Reporting
(SR) document (file format or raw data set) to HTML (Hyper Text Markup
Language) version 3.2 or 4.01 as well as to XHTML (Extensible Hyper Text Markup
Language) version 1.1.

If \b dsr2html reads a raw data set (DICOM data without a file format
meta-header) it will attempt to guess the transfer syntax by examining the
first few bytes of the file.  It is not always possible to correctly guess the
transfer syntax and it is better to convert a data set to a file format
whenever possible (using the \b dcmconv utility).  It is also possible to use
the \e -f and <em>-t[ieb]</em> options to force \b dsr2html to read a dataset
with a particular transfer syntax.

\section dsr2html_parameters PARAMETERS

\verbatim
dsrfile-in    DICOM SR input filename to be rendered

htmlfile-out  HTML/XHTML output filename (default: stdout)
\endverbatim

\section dsr2html_options OPTIONS

\subsection dsr2html_general_options general options
\verbatim
  -h   --help
         print this help text and exit

       --version
         print version information and exit

       --arguments
         print expanded command line arguments

  -q   --quiet
         quiet mode, print no warnings and errors

  -v   --verbose
         verbose mode, print processing details

  -d   --debug
         debug mode, print debug information

  -ll  --log-level  [l]evel: string constant
         (fatal, error, warn, info, debug, trace)
         use level l for the logger

  -lc  --log-config  [f]ilename: string
         use config file f for the logger
\endverbatim

\subsection dsr2html_input_options input options
\verbatim
input file format:

  +f   --read-file
         read file format or data set (default)

  +fo  --read-file-only
         read file format only

  -f   --read-dataset
         read data set without file meta information

input transfer syntax:

  -t=  --read-xfer-auto
         use TS recognition (default)

  -td  --read-xfer-detect
         ignore TS specified in the file meta header

  -te  --read-xfer-little
         read with explicit VR little endian TS

  -tb  --read-xfer-big
         read with explicit VR big endian TS

  -ti  --read-xfer-implicit
         read with implicit VR little endian TS
\endverbatim

\subsection dsr2html_processing_options processing options
\verbatim
additional information:

  -Ip  --processing-details
         show currently processed content item

error handling:

  -Er  --unknown-relationship
         accept unknown/missing relationship type

  -Ev  --invalid-item-value
         accept invalid content item value
         (e.g. violation of VR or VM definition)

  -Ec  --ignore-constraints
         ignore relationship content constraints

  -Ee  --ignore-item-errors
         do not abort on content item errors, just warn
         (e.g. missing value type specific attributes)

  -Ei  --skip-invalid-items
         skip invalid content items (incl. sub-tree)

  -Dv  --disable-vr-checker
         disable check for VR-conformant string values

specific character set:

  +Cr  --charset-require
         require declaration of extended charset (default)

  +Ca  --charset-assume  [c]harset: string
         assume charset c if no extended charset declared

       --charset-check-all
         check all data elements with string values
         (default: only PN, LO, LT, SH, ST, UC and UT)

         # this option is only used for the mapping to an appropriate
         # HTML/XHTML character encoding, but not for the conversion
         # to UTF-8

  +U8  --convert-to-utf8
         convert all element values that are affected
         by Specific Character Set (0008,0005) to UTF-8

         # requires support from an underlying character encoding library
         # (see output of --version on which one is available)
\endverbatim

\subsection dsr2html_output_options output options
\verbatim
HTML/XHTML compatibility:

  +H3  --html-3.2
         use only HTML version 3.2 compatible features

  +H4  --html-4.0
         allow all HTML version 4.01 features (default)

  +X1  --xhtml-1.1
         comply with XHTML version 1.1 specification

  +Hd  --add-document-type
         add reference to SGML document type definition

cascading style sheet (CSS), not with HTML 3.2:

  +Sr  --css-reference  URL: string
         add reference to specified CSS to document

  +Sf  --css-file  [f]ilename: string
         embed content of specified CSS into document

general rendering:

  +Ri  --expand-inline
         expand short content items inline (default)

  -Ri  --never-expand-inline
         never expand content items inline

  +Ra  --always-expand-inline
         always expand content items inline

  +Rd  --render-full-data
         render full data of content items

  +Rt  --section-title-inline
         render section titles inline, not separately

document rendering:

  +Dt  --document-type-title
         use document type as document title (default)

  +Dp  --patient-info-title
         use patient information as document title

  -Dh  --no-document-header
         do not render general document information

code rendering:

  +Ci  --render-inline-codes
         render codes in continuous text blocks

  +Cn  --concept-name-codes
         render code of concept names

  +Cu  --numeric-unit-codes
         render code of numeric measurement units

  +Cv  --code-value-unit
         use code value as measurement unit (default)

  +Cm  --code-meaning-unit
         use code meaning as measurement unit

  +Cc  --render-all-codes
         render all codes (implies +Ci, +Cn and +Cu)

  +Ct  --code-details-tooltip
         render code details as a tooltip (implies +Cc)
\endverbatim

\section dsr2html_notes NOTES

\subsection dsr2html_dicom_conformance DICOM Conformance

The \b dsr2html utility supports the following SOP Classes:

\verbatim
SpectaclePrescriptionReportStorage          1.2.840.10008.5.1.4.1.1.78.6
MacularGridThicknessAndVolumeReportStorage  1.2.840.10008.5.1.4.1.1.79.1
BasicTextSRStorage                          1.2.840.10008.5.1.4.1.1.88.11
EnhancedSRStorage                           1.2.840.10008.5.1.4.1.1.88.22
ComprehensiveSRStorage                      1.2.840.10008.5.1.4.1.1.88.33
Comprehensive3DSRStorage                    1.2.840.10008.5.1.4.1.1.88.34
ProcedureLogStorage                         1.2.840.10008.5.1.4.1.1.88.40
MammographyCADSRStorage                     1.2.840.10008.5.1.4.1.1.88.50
KeyObjectSelectionDocumentStorage           1.2.840.10008.5.1.4.1.1.88.59
ChestCADSRStorage                           1.2.840.10008.5.1.4.1.1.88.65
XRayRadiationDoseSRStorage                  1.2.840.10008.5.1.4.1.1.88.67
RadiopharmaceuticalRadiationDoseSRStorage   1.2.840.10008.5.1.4.1.1.88.68
ColonCADSRStorage                           1.2.840.10008.5.1.4.1.1.88.69
ImplantationPlanSRDocumentStorage           1.2.840.10008.5.1.4.1.1.88.70
AcquisitionContextSRStorage                 1.2.840.10008.5.1.4.1.1.88.71
SimplifiedAdultEchoSRStorage                1.2.840.10008.5.1.4.1.1.88.72
\endverbatim

\subsection dsr2html_character_encoding Character Encoding

The HTML/XHTML encoding is determined automatically from the DICOM attribute
(0008,0005) "Specific Character Set" using the following mapping:

\verbatim
ASCII         (ISO_IR 6)                       =>  (none)
UTF-8         "ISO_IR 192"                     =>  "UTF-8"
ISO Latin 1   "ISO_IR 100"                     =>  "ISO-8859-1"
ISO Latin 2   "ISO_IR 101"                     =>  "ISO-8859-2"
ISO Latin 3   "ISO_IR 109"                     =>  "ISO-8859-3"
ISO Latin 4   "ISO_IR 110"                     =>  "ISO-8859-4"
ISO Latin 5   "ISO_IR 148"                     =>  "ISO-8859-9"
Cyrillic      "ISO_IR 144"                     =>  "ISO-8859-5"
Arabic        "ISO_IR 127"                     =>  "ISO-8859-6"
Greek         "ISO_IR 126"                     =>  "ISO-8859-7"
Hebrew        "ISO_IR 138"                     =>  "ISO-8859-8"
Thai          "ISO_IR 166"                     =>  "TIS-620"
Japanese      "ISO 2022 IR 13\ISO 2022 IR 87"  =>  "ISO-2022-JP"
Korean        "ISO 2022 IR 6\ISO 2022 IR 149"  =>  "ISO-2022-KR"
Chinese       "ISO 2022 IR 6\ISO 2022 IR 58"   =>  "ISO-2022-CN"
Chinese       "GB18030"                        =>  "GB18030"
Chinese       "GBK"                            =>  "GBK"
\endverbatim

If this DICOM attribute is missing in the input file, although needed, option
\e --charset-assume can be used to specify an appropriate character set
manually (using one of the DICOM defined terms).  For reasons of backward
compatibility with previous versions of this tool, the following terms are also
supported and mapped automatically to the associated DICOM defined terms:
latin-1, latin-2, latin-3, latin-4, latin-5, cyrillic, arabic, greek, hebrew.

Option \e --convert-to-utf8 can be used to convert the DICOM file or data set
to UTF-8 encoding prior to the rendering to HTML/XHTML format.

\section dsr2html_logging LOGGING

The level of logging output of the various command line tools and underlying
libraries can be specified by the user.  By default, only errors and warnings
are written to the standard error stream.  Using option \e --verbose also
informational messages like processing details are reported.  Option
\e --debug can be used to get more details on the internal activity, e.g. for
debugging purposes.  Other logging levels can be selected using option
\e --log-level.  In \e --quiet mode only fatal errors are reported.  In such
very severe error events, the application will usually terminate.  For more
details on the different logging levels, see documentation of module "oflog".

In case the logging output should be written to file (optionally with logfile
rotation), to syslog (Unix) or the event log (Windows) option \e --log-config
can be used.  This configuration file also allows for directing only certain
messages to a particular output stream and for filtering certain messages
based on the module or application where they are generated.  An example
configuration file is provided in <em>\<etcdir\>/logger.cfg</em>.

\section dsr2html_command_line COMMAND LINE

All command line tools use the following notation for parameters: square
brackets enclose optional values (0-1), three trailing dots indicate that
multiple values are allowed (1-n), a combination of both means 0 to n values.

Command line options are distinguished from parameters by a leading '+' or '-'
sign, respectively.  Usually, order and position of command line options are
arbitrary (i.e. they can appear anywhere).  However, if options are mutually
exclusive the rightmost appearance is used.  This behavior conforms to the
standard evaluation rules of common Unix shells.

In addition, one or more command files can be specified using an '@' sign as a
prefix to the filename (e.g. <em>\@command.txt</em>).  Such a command argument
is replaced by the content of the corresponding text file (multiple
whitespaces are treated as a single separator unless they appear between two
quotation marks) prior to any further evaluation.  Please note that a command
file cannot contain another command file.  This simple but effective approach
allows one to summarize common combinations of options/parameters and avoids
longish and confusing command lines (an example is provided in file
<em>\<datadir\>/dumppat.txt</em>).

\section dsr2html_environment ENVIRONMENT

The \b dsr2html utility will attempt to load DICOM data dictionaries specified
in the \e DCMDICTPATH environment variable.  By default, i.e. if the
\e DCMDICTPATH environment variable is not set, the file
<em>\<datadir\>/dicom.dic</em> will be loaded unless the dictionary is built
into the application (default for Windows).

The default behavior should be preferred and the \e DCMDICTPATH environment
variable only used when alternative data dictionaries are required.  The
\e DCMDICTPATH environment variable has the same format as the Unix shell
\e PATH variable in that a colon (":") separates entries.  On Windows systems,
a semicolon (";") is used as a separator.  The data dictionary code will
attempt to load each file specified in the \e DCMDICTPATH environment variable.
It is an error if no data dictionary can be loaded.

\section dsr2html_files FILES

<em>\<datadir\>/report.css</em> - Sample Cascading Stylesheet file for HTML
<em>\<datadir\>/reportx.css</em> - Sample Cascading Stylesheet file for XHTML

\section dsr2html_see_also SEE ALSO

<b>dcmconv</b>(1)

\section dsr2html_copyright COPYRIGHT

Copyright (C) 2000-2016 by OFFIS e.V., Escherweg 2, 26121 Oldenburg, Germany.

*/
